PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_18777g0020
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 256aa    MW: 29027.8 Da    PI: 7.3632
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_18777g0020genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.42.3e-07189230550
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveY 50 
                    h  +Er+RR+++ + f+ Lr l+P +     +K    a++L ++ +Y
  MA_18777g0020 189 HVVAERKRREQMSDVFSALRALVPVN-----PKnAGRATVLLQTKDY 230
                    8899********************96.....2335566666666666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.309184234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.3E-13184251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-13188250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.37E-8188239No hitNo description
PfamPF000101.1E-4189230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-7190240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MCSPSSSPKF LLDDIYKTSV EAIDRSKIDD YKGCEHDFID PLTHWQVDSF ESVAADDLCC  60
CLPPTSFNDL ASSDLVLQNQ IGIDNGQLSL QLDESIISVF NEGINSNWTG LGLSFNQKRN  120
SAFVEWKAIN PDSTRSCKRQ KYSSLQKRCI RFLNDINNHR ILRPLGYNNN SGKRSMAVSN  180
NYDKLAIHHV VAERKRREQM SDVFSALRAL VPVNPKNAGR ATVLLQTKDY VIALKKDIQQ  240
LEQRNRELEA LLCQES
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192197ERKRRE
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1200956
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.16e-10bHLH family protein